Y. He, J. Yang, B. Wu, D. Robinson, K. Sprankle, P.P. Kung, K. Lowery, V. Mohan, S. Hofstadler, E.E. Swayze and R. Griffey, Synthesis and evaluation of novel bacterial rRNA-binding benzimidazoles by mass spectrometry, Bioorg Med Chem Lett. 14, 695, 2004.
M.A. Maier, C.G. Yannopoulos, N. Mohamed, A. Roland, H. Fritz, V. Mohan, G. Just and M. Manoharan, Synthesis of Antisense Oligonucleotides Conjugated to a Multivalent Carbohydrate Cluster for Cellular Targeting, Bioconjugate Chemistry, 14, 18, 2003.
J. Li, S.A. Lee, A. Anderson, L. Lettress, R.H. Griffey and V. Mohan, Temperature-dependent Raman and infrared spectra of nucleosides. III – deoxycytidine, Journal of Raman Spectroscopy, 34, 183, 2003.
J. Li, S.A. Lee, D.A. Pinnick, A. Anderson, W. Smith, R.H. Griffey, and V. Mohan, Raman and infrared studies of nucleosides at high pressures: II. Cytidine, Journal of Biomolecular Structure & Dynamics 19, 1111, 2002.
M. Prhavc, E. Lesnik, V. Mohan, and Manoharan, M., 2’-O-Carbamate containing oligonucleotides: synthesis and properties, Tett. Lett. 42, 8777, 2001.
R.H. Griffey, K.A. Sannes-Lowery, J.J. Drader, V. Mohan, E.E. Swayze and S.A. Hofstadler, Characterization of Low-Affinity Complexes between RNA and Small Molecules Using Electrospray Ionization Mass Spectrometry, J. Am. Chem. Soc. 122, 9933, 2000.
Y.Z. Chen, V. Mohan and R.H. Griffey, Spontaneous base flipping in DNA and its possible role in methyltransferase binding, Phys. Rev. E 62, 1133,2000.
Y.Z. Chen, V. Mohan and R.H. Griffey, Base opening in RNA and DNA duplexes: Implication for RNA stability, Phys. Rev. E 61, 5640, 2000.
A. Filikov, V. Mohan, T.A. Vickers, R.H. Griffey, P.D. Cook, R. A. Abagyan and T.L. James, RNA-targeted ligand discovery, Comput.-Aided Mole. Des. 14, 593, 2000.
D.N. Chin, F. Sussman, H. M. Chun, R. Czerminski, T. Schlick and V. Mohan, A simple solvation model for rapid DNA dynamics. Molecular Simulations 24, 449, 2000.
D. Venkateswarlu, K.E. Lind, V. Mohan, M. Manoharan, and D.M. Ferguson, Structural properties of DNA:RNA duplexes containing 2’-O-methyl and 2’-S-methyl substitutions: A molecular dynamics investigation, Nucl.Acid.Res. 27, 2189, 1999.
K.C. Martin, D.A. Pinnick, S.A. Lee, A. Anderson, W.Smith, R.H. Griffey and V. Mohan, Raman and Infrared studies of nucleosides at high pressures I: Adenosine, J. Biomol. Struct. Dyn. 16, 1159,1999.
H. An, T. Wang, V. Mohan, R.H. Griffey, and P.D. Cook, Solution phase combinatorial chemistry. Discovery of 13- and 15- membered polyazapyridinocyclophane libraries with antibacterial activity, Tetrahedron 54, 3999, 1998.
Y.Z. Chen, V. Mohan, and R.H. Griffey, The opening of a single base without perturbations of neighboring nucleotides: A study on crystal B-DNA duplex d(CGCGAATTCGCG)2, J. Biomol. Struct. Dyn. 15, 765, 1998.
Y.Z. Chen, V. Mohan, and R.H. Griffey, Effect of backbone x torsion angle on low energy single base opening in B-DNA crystal structures, Chem. Phys. Lett. 287, 570, 1998.
G. Balow, V. Mohan, E. A. Lesnik, J. F. Johnston, B. P. Monia, O. L. Acevedo, Biophysical and antisense properties of oligodeoxynucleotides containing 7-propynyl-, 7-iodo- and 7-cyano-7-deaza-2-amino-2’-deoxyadenosines, Nucl.Acid.Res. 26, 3350, 1998.
Y.Z. Chen, V. Mohan, and R.H. Griffey, Principal Torsion Angles of Collective Motions in Biomolecules: A Study on Single Base Opening in DNA Duplexes, Phys. Rev. E58, 909, 1998.
K.E. Lind, L.D. Sherlin, V. Mohan, R.H. Griffey and D.M. Ferguson, Parametrization and simulation of the physical properties of phosphorothioate nucleic acids, ACS Symposium series 682, Molecular modeling of nucleic acids, Ed. N.B. Leontis and J. SantaLucia, Jr. 1998.
K.E. Lind, V. Mohan, M. Manoharan, and D.M. Ferguson, Structural characeteristics of 2’-O-(2-methoxyethyl)-modified nucleic acids from molecular dynamics simulations, Nucl.Acid.Res.26, 3694, 1998.
W.F. Lima, V. Mohan and S.T. Crooke, The influence of antisense oligonucleotide-induced RNA structure on E. Coli RNase H activity, J. Biol.Chem. 272, 18191, 1997.
C.A. Steinke, K.K. Reeves, J.W. Powell, S.A. Lee, Y.Z. Chen, T.K. Wyrzykiewicz, R. H. Griffey and V. Mohan , Vibrational analysis of phosphorothioate DNA: II. The POS group in the model compound dimethyl phosphorothioate, J. Biomol. Struct. Dyn. 14, 509, 1997.
A. P. White, K. K. Reeves, E. Snyder, J. Farrell, J. W. Powell, V. Mohan, R. H. Griffey and H. Sasmor, Hydration of single-stranded phosphodiester and phosphorothioate oligodeoxyribonucleotides, Nucl.Acid.Res. 24, 3261,1996.
M. Manoharan, K. Ramasamy, V. Mohan, and P.D. Cook, Oligonucleotides bearing cationic groups N2-(3-aminopropyl) deoxyguanosine. Synthesis, enhanced binding properties and conjugation chemistry, Tet. Lett. 37, 7675, 1996.
R. H. Griffey, B. P. Monia, L.L. Cummins, S. Freier, M. J. Greig, C. J. Guinosso, E. Lesnik, S. M. Manalili, V. Mohan, S. Owens, B.R. Ross, H. Sasmor, E. Wancewicz, K. Weiler, P. D. Wheeler, and P.D. Cook, 2'-O Aminopropyl ribonucleotides:A zwitterionic modification that enhances the exonuclease resistance and biological activity of antisense oligonucleotides, J. Med. Chem. 26, 5100, 1996.
B. Haly, L. Bellon, V. Mohan, and Y. Sanghvi, An extended phosphate linkage: synthesis, hybridization and modeling studies of modified oligonucleotides, Nucleoside and Nucleotide, 15, 1383, 1996.
S. Weerasinghe, P.E. Smith, V. Mohan, Y.-K. Cheng, and B. M. Pettitt, Nanosecond dynamics of a model DNA triple helix in saltwater solution, J.Am.Chem.Soc. 117, 2147, 1995.
V. Mohan, R.H. Griffey and D.R. Davis, Structure and dynamics of MMI linked nucleotides, Tetrahedron, 51, 6855, 1995.
M. Manoharan, K.l. Tivel, L.K. Andrade, V. Mohan, T.P. Condon, C.F. Bennet and P.D. Cook, Oligonucleotide conjugates: Alteration of the pharmacokinetic properties of antisense agents, Nucleoside and Nucleotide, 14, 969, 1995.
V. T. Ravikumar, T.K. Wyrzykiewicz, V. Mohan and D.L. Cole, Structural investigations of model deadenylated oligonucleotide phosphorothioate analog of ISIS 2105, Nucleoside and Nucleotide, 13, 2195, 1994.
S.-M. Chen, V. Mohan, J.S. Kiely, M.C. Griffith and R.H. Griffey, Molecular dynamics and NMR studies of single stranded PNAs. Tet. Lett. 35, 5105, 1994.
R.H. Griffey, E. Lesnik, S. Freier, Y.S. Sanghvi, K. Teng, A. Kawasaki, C. Guinosso, P. Wheeler, V. Mohan and P.D. Cook, New twists on nucleic acids: Structural properties of modified nucleotides incorporated into oligonucleotides, ACS Symposium series 580, 1994.
V. Mohan, P.E. Smith and B.M. Pettitt, Molecular dynamics simulation of ions and water around triplex DNA, J. Phys. Chem. 97, 12984, 1993.
V. Mohan, P.E. Smith and B. M. Pettitt, Evidence for new spine of hydration: solvation of DNA triple helices, J.Am.Chem.Soc. 115, 9297, 1993.
V. Mohan, Y.-K. Cheng, G. Marlow, and B. M. Pettitt, Molecular recognition of Watson-Crick basepair reversals in triplex formation: use of non-natural oligonucleotide bases, Biopolymers, 33, 1317, 1993.
V. Mohan, M.E. Davis, J.A. McCammon and B. M. Pettitt, Continuum model calculations of solvation energies: Accurate evaluation of electrostatic contributions, J. Phys. Chem. 96, 6428, 1992.